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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs4671458 1 rs4671460 chr2:63397203 C2orf86 chr2:63348537-63815851:- -0.19 -3.87 0.000124 Subjective well-being
THCA cis rs4671458 1 rs4671461 chr2:63406800 C2orf86 chr2:63348537-63815851:- -0.19 -3.87 0.000124 Subjective well-being
THCA cis rs962856 1 rs4671794 chr2:67566658 ETAA1 chr2:67624442-67637533:+ -0.18 -4.25 2.56E-5 Pancreatic cancer
THCA cis rs3820928 1 rs4673173 chr2:227769493 COL4A4 chr2:227867435-228029275:- 0.16 4.06 5.82E-5 Pulmonary function
THCA cis rs4803468 1 rs4674 chr19:41930396 B3GNT8 chr19:41931265-41934635:- -0.35 -8.12 4.11E-15 Height
THCA cis rs4803468 1 rs4674 chr19:41930396 EXOSC5 chr19:41892278-41903256:- -0.11 -3.65 0.000292 Height
THCA cis rs7590720 1 rs4674048 chr2:216900023 MREG chr2:216807315-216878346:- 0.38 8.04 7.33E-15 Alcohol dependence
THCA cis rs7590720 1 rs4674048 chr2:216900023 PECR chr2:216861029-216946532:- 0.24 5.02 7.32E-7 Alcohol dependence
THCA cis rs7590720 1 rs4674051 chr2:216907512 MREG chr2:216807315-216878346:- 0.37 7.85 2.76E-14 Alcohol dependence
THCA cis rs7590720 1 rs4674051 chr2:216907512 PECR chr2:216861029-216946532:- 0.24 4.97 9.48E-7 Alcohol dependence
THCA cis rs7590720 1 rs4674058 chr2:216909368 MREG chr2:216807315-216878346:- 0.37 7.73 6.41E-14 Alcohol dependence
THCA cis rs7590720 1 rs4674058 chr2:216909368 PECR chr2:216861029-216946532:- 0.24 4.88 1.44E-6 Alcohol dependence
THCA cis rs994533 1 rs4674164 chr2:218274897 DIRC3 chr2:218148748-218621316:- 0.22 5.17 3.52E-7 Height
THCA cis rs994533 1 rs4674165 chr2:218274943 DIRC3 chr2:218148748-218621316:- 0.22 5.22 2.71E-7 Height
THCA cis rs994533 1 rs4674167 chr2:218275370 DIRC3 chr2:218148748-218621316:- 0.22 5.16 3.55E-7 Height